All files / metadata/src/utilities/metadataProvider imagePlaneCalibrated.ts

97.36% Statements 37/38
70.83% Branches 17/24
66.66% Functions 2/3
97.36% Lines 37/38

Press n or j to go to the next uncovered block, b, p or k for the previous block.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117                  128x           238x 193x   45x 45x               45x 45x 45x   45x 16x 16x       16x 16x             29x 29x     45x 16x     16x 16x   29x 29x 29x 29x 29x 29x     45x     45x 29x     45x 45x   45x           45x                                   45x     45x     45x       45x       384x        
import type { ImagePlaneModuleMetadata } from '../../types';
import { MetadataModules } from '../../enums';
import { toFiniteNumber } from '../toNumber';
import { getNaturalizedNumber } from '../getNaturalizedField';
import calibratedPixelSpacingMetadataProvider from '../calibratedPixelSpacingMetadataProvider';
import getPixelSpacingInformation from '../getPixelSpacingInformation';
 
import { addTypedProvider } from '../../metaData';
 
export const getImagePlaneCalibrated = (
  next,
  imageId: string,
  instance,
  options
): ImagePlaneModuleMetadata => {
  if (!instance) {
    return next(imageId, instance, options);
  }
  const { ImageOrientationPatient, ImagePositionPatient } = instance;
  const { PixelSpacing, type } = getPixelSpacingInformation(instance);
 
  let rowPixelSpacing;
  let columnPixelSpacing;
 
  let rowCosines: number[];
  let columnCosines: number[];
 
  let usingDefaultValues = false;
  let isDefaultValueSetForRowCosine = false;
  let isDefaultValueSetForColumnCosine = false;
  let imageOrientationPatient: number[];
  if (PixelSpacing) {
    [rowPixelSpacing, columnPixelSpacing] = PixelSpacing;
    const calibratedPixelSpacing = calibratedPixelSpacingMetadataProvider.get(
      'calibratedPixelSpacing',
      imageId
    );
    Eif (!calibratedPixelSpacing) {
      calibratedPixelSpacingMetadataProvider.add(imageId, {
        rowPixelSpacing: parseFloat(PixelSpacing[0]),
        columnPixelSpacing: parseFloat(PixelSpacing[1]),
        type,
      });
    }
  } else {
    rowPixelSpacing = columnPixelSpacing = 1;
    usingDefaultValues = true;
  }
 
  if (ImageOrientationPatient) {
    imageOrientationPatient = toFiniteNumber(
      ImageOrientationPatient as ArrayLike<string | String | number | Number>
    ) || [1, 0, 0, 0, 1, 0];
    rowCosines = imageOrientationPatient.slice(0, 3);
    columnCosines = imageOrientationPatient.slice(3, 6);
  } else {
    rowCosines = [1, 0, 0];
    columnCosines = [0, 1, 0];
    imageOrientationPatient = [1, 0, 0, 0, 1, 0];
    usingDefaultValues = true;
    isDefaultValueSetForRowCosine = true;
    isDefaultValueSetForColumnCosine = true;
  }
 
  const imagePositionPatient = toFiniteNumber(
    ImagePositionPatient as ArrayLike<string | String | number | Number>
  ) || [0, 0, 0];
  if (!ImagePositionPatient) {
    usingDefaultValues = true;
  }
 
  const rowPixelSpacingNumber = toFiniteNumber(rowPixelSpacing) ?? null;
  const columnPixelSpacingNumber = toFiniteNumber(columnPixelSpacing) ?? null;
  const pixelSpacing =
    rowPixelSpacingNumber !== null && columnPixelSpacingNumber !== null
      ? [rowPixelSpacingNumber, columnPixelSpacingNumber]
      : Array.isArray(PixelSpacing)
        ? PixelSpacing.map((value) => Number(value)).filter(Number.isFinite)
        : [];
 
  const result = {
    frameOfReferenceUID: instance.FrameOfReferenceUID,
    rows: getNaturalizedNumber(instance, 'Rows', 0),
    columns: getNaturalizedNumber(instance, 'Columns', 0),
    imageOrientationPatient,
    rowCosines,
    columnCosines,
    imagePositionPatient,
    sliceLocation: getNaturalizedNumber(instance, 'SliceLocation', 0),
    pixelSpacing,
    rowPixelSpacing: rowPixelSpacingNumber,
    sliceThickness: getNaturalizedNumber(instance, 'SliceThickness'),
    spacingBetweenSlices: getNaturalizedNumber(
      instance,
      'SpacingBetweenSlices'
    ),
    columnPixelSpacing: columnPixelSpacingNumber,
  };
  Object.defineProperty(result, 'usingDefaultValues', {
    value: usingDefaultValues,
  });
  Object.defineProperty(result, 'isDefaultValueSetForRowCosine', {
    value: isDefaultValueSetForRowCosine,
  });
  Object.defineProperty(result, 'isDefaultValueSetForColumnCosine', {
    value: isDefaultValueSetForColumnCosine,
  });
 
  return result;
};
 
export function registerImagePlaneCalibrated() {
  addTypedProvider(MetadataModules.IMAGE_PLANE, getImagePlaneCalibrated);
}
 
export default getImagePlaneCalibrated;