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import * as dicomParser from 'dicom-parser';
import getNumberValues from './getNumberValues';
import parseImageId from '../parseImageId';
import dataSetCacheManager from '../dataSetCacheManager';
import getImagePixelModule from './getImagePixelModule';
import getOverlayPlaneModule from './getOverlayPlaneModule';
import getLUTs from './getLUTs';
import getModalityLUTOutputPixelRepresentation from './getModalityLUTOutputPixelRepresentation';
import { getDirectFrameInformation } from '../combineFrameInstanceDataset';
import multiframeDataset from '../retrieveMultiframeDataset';
import {
getImageTypeSubItemFromDataset,
extractOrientationFromDataset,
extractPositionFromDataset,
extractSpacingFromDataset,
extractSliceThicknessFromDataset,
} from './extractPositioningFromDataset';
import isNMReconstructable from '../../isNMReconstructable';
import {
getInstanceModule,
instanceModuleNames,
} from '../../getInstanceModule';
import { getUSEnhancedRegions } from './USHelpers';
function metaDataProvider(type, imageId) {
const { MetadataModules } = Enums;
// Several providers use array queries
Iif (Array.isArray(imageId)) {
return;
}
const parsedImageId = parseImageId(imageId);
if (type === MetadataModules.MULTIFRAME) {
const multiframeData = multiframeDataset.retrieveMultiframeDataset(
parsedImageId.url
);
Eif (!multiframeData.dataSet) {
return;
}
const multiframeInfo = getDirectFrameInformation(
multiframeData.dataSet,
multiframeData.frame
);
return multiframeInfo;
}
let url = parsedImageId.url;
Iif (parsedImageId.frame) {
url = `${url}&frame=${parsedImageId.frame}`;
}
const dataSet = dataSetCacheManager.get(url);
if (!dataSet) {
return;
}
return metadataForDataset(type, imageId, dataSet);
}
export function metadataForDataset(
type,
imageId,
dataSet: dicomParser.DataSet
) {
const { MetadataModules } = Enums;
Iif (type === MetadataModules.GENERAL_STUDY) {
return {
studyDescription: dataSet.string('x00081030'),
studyDate: dicomParser.parseDA(dataSet.string('x00080020')),
studyTime: dicomParser.parseTM(dataSet.string('x00080030') || ''),
accessionNumber: dataSet.string('x00080050'),
};
}
if (type === MetadataModules.GENERAL_SERIES) {
return {
modality: dataSet.string('x00080060'),
seriesInstanceUID: dataSet.string('x0020000e'),
seriesDescription: dataSet.string('x0008103e'),
seriesNumber: dataSet.intString('x00200011'),
studyInstanceUID: dataSet.string('x0020000d'),
seriesDate: dicomParser.parseDA(dataSet.string('x00080021')),
seriesTime: dicomParser.parseTM(dataSet.string('x00080031') || ''),
acquisitionDate: dicomParser.parseDA(dataSet.string('x00080022')),
acquisitionTime: dicomParser.parseTM(dataSet.string('x00080032') || ''),
};
}
Iif (type === MetadataModules.GENERAL_IMAGE) {
return {
sopInstanceUID: dataSet.string('x00080018'),
instanceNumber: dataSet.intString('x00200013'),
lossyImageCompression: dataSet.string('x00282110'),
lossyImageCompressionRatio: dataSet.floatString('x00282112'),
lossyImageCompressionMethod: dataSet.string('x00282114'),
};
}
Iif (type === MetadataModules.PATIENT) {
return {
patientID: dataSet.string('x00100020'),
patientName: dataSet.string('x00100010'),
};
}
Iif (type === MetadataModules.PATIENT_STUDY) {
return {
patientAge: dataSet.intString('x00101010'),
patientSize: dataSet.floatString('x00101020'),
patientSex: dataSet.string('x00100040'),
patientWeight: dataSet.floatString('x00101030'),
};
}
Iif (type === MetadataModules.NM_MULTIFRAME_GEOMETRY) {
const modality = dataSet.string('x00080060');
const imageSubType = getImageTypeSubItemFromDataset(dataSet, 2);
return {
modality,
imageType: dataSet.string('x00080008'),
imageSubType,
imageOrientationPatient: extractOrientationFromDataset(dataSet),
imagePositionPatient: extractPositionFromDataset(dataSet),
sliceThickness: extractSliceThicknessFromDataset(dataSet),
pixelSpacing: extractSpacingFromDataset(dataSet),
numberOfFrames: dataSet.uint16('x00280008'),
isNMReconstructable:
isNMReconstructable(imageSubType) && modality.includes('NM'),
};
}
if (type === MetadataModules.IMAGE_PLANE) {
const imageOrientationPatient = extractOrientationFromDataset(dataSet);
const imagePositionPatient = extractPositionFromDataset(dataSet);
const pixelSpacing = extractSpacingFromDataset(dataSet);
const sliceThickness = extractSliceThicknessFromDataset(dataSet);
let columnPixelSpacing = null;
let rowPixelSpacing = null;
if (pixelSpacing) {
rowPixelSpacing = pixelSpacing[0];
columnPixelSpacing = pixelSpacing[1];
}
let rowCosines = null;
let columnCosines = null;
if (imageOrientationPatient) {
rowCosines = [
// @ts-expect-error
parseFloat(imageOrientationPatient[0]),
// @ts-expect-error
parseFloat(imageOrientationPatient[1]),
// @ts-expect-error
parseFloat(imageOrientationPatient[2]),
];
columnCosines = [
// @ts-expect-error
parseFloat(imageOrientationPatient[3]),
// @ts-expect-error
parseFloat(imageOrientationPatient[4]),
// @ts-expect-error
parseFloat(imageOrientationPatient[5]),
];
}
return {
frameOfReferenceUID: dataSet.string('x00200052'),
rows: dataSet.uint16('x00280010'),
columns: dataSet.uint16('x00280011'),
imageOrientationPatient,
rowCosines,
columnCosines,
imagePositionPatient,
sliceThickness,
sliceLocation: dataSet.floatString('x00201041'),
pixelSpacing,
rowPixelSpacing,
columnPixelSpacing,
};
}
Iif (type === MetadataModules.CINE) {
return {
frameTime: dataSet.floatString('x00181063'),
};
}
if (type === MetadataModules.IMAGE_PIXEL) {
return getImagePixelModule(dataSet);
}
if (type === MetadataModules.VOI_LUT) {
const modalityLUTOutputPixelRepresentation =
getModalityLUTOutputPixelRepresentation(dataSet);
return {
windowCenter: getNumberValues(dataSet, 'x00281050', 1),
windowWidth: getNumberValues(dataSet, 'x00281051', 1),
voiLUTSequence: getLUTs(
modalityLUTOutputPixelRepresentation,
dataSet.elements.x00283010
),
voiLUTFunction: dataSet.string('x00281056'),
};
}
if (type === MetadataModules.MODALITY_LUT) {
return {
rescaleIntercept: dataSet.floatString('x00281052'),
rescaleSlope: dataSet.floatString('x00281053'),
rescaleType: dataSet.string('x00281054'),
modalityLUTSequence: getLUTs(
dataSet.uint16('x00280103'),
dataSet.elements.x00283000
),
};
}
if (type === MetadataModules.SOP_COMMON) {
return {
sopClassUID: dataSet.string('x00080016'),
sopInstanceUID: dataSet.string('x00080018'),
};
}
Iif (type === MetadataModules.PET_ISOTOPE) {
const radiopharmaceuticalInfo = dataSet.elements.x00540016;
if (radiopharmaceuticalInfo === undefined) {
return;
}
const firstRadiopharmaceuticalInfoDataSet =
radiopharmaceuticalInfo.items[0].dataSet;
return {
radiopharmaceuticalInfo: {
radiopharmaceuticalStartTime: dicomParser.parseTM(
firstRadiopharmaceuticalInfoDataSet.string('x00181072') || ''
),
radionuclideTotalDose:
firstRadiopharmaceuticalInfoDataSet.floatString('x00181074'),
radionuclideHalfLife:
firstRadiopharmaceuticalInfoDataSet.floatString('x00181075'),
},
};
}
Iif (type === MetadataModules.OVERLAY_PLANE) {
return getOverlayPlaneModule(dataSet);
}
// Note: this is not a DICOM module, but a useful metadata that can be
// retrieved from the image
Iif (type === 'transferSyntax') {
let transferSyntaxUID;
try {
transferSyntaxUID = dataSet.string('x00020010');
} catch (error) {
// Do nothing
}
return {
transferSyntaxUID,
};
}
Iif (type === MetadataModules.PET_SERIES) {
return {
correctedImage: dataSet.string('x00280051'),
units: dataSet.string('x00541001'),
decayCorrection: dataSet.string('x00541102'),
};
}
Iif (type === MetadataModules.PET_IMAGE) {
return {
frameReferenceTime: dataSet.floatString(
dataSet.string('x00541300') || ''
),
actualFrameDuration: dataSet.intString(dataSet.string('x00181242')),
};
}
Iif (type === MetadataModules.ULTRASOUND_ENHANCED_REGION) {
return getUSEnhancedRegions(dataSet);
}
if (type === MetadataModules.CALIBRATION) {
const modality = dataSet.string('x00080060');
Iif (modality === 'US') {
const enhancedRegion = getUSEnhancedRegions(dataSet);
return {
sequenceOfUltrasoundRegions: enhancedRegion,
};
}
}
// Note: this is not a DICOM module, but rather an aggregation on all others
Iif (type === 'instance') {
return getInstanceModule(imageId, metaDataProvider, instanceModuleNames);
}
}
export default metaDataProvider;
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